PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31527-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 274aa    MW: 30547.8 Da    PI: 5.5915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31527-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+ll+ +v+q G g+W+++a+  g++R++k+c++rw +yl
  TRIUR3_31527-P1 15 KGPWTAQEDKLLLGYVRQQGDGRWNSVAKLTGLKRSGKSCRLRWVNYL 62
                     79********************************************97 PP

2Myb_DNA-binding513.2e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T++E+  ++++++++G++ W+tIar ++ gRt++++k++w+++
  TRIUR3_31527-P1  68 RGKITPQEETVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112
                      8999******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9111062IPR017930Myb domain
SuperFamilySSF466894.49E-2913109IPR009057Homeodomain-like
SMARTSM007172.4E-131464IPR001005SANT/Myb domain
PfamPF002497.9E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-231669IPR009057Homeodomain-like
CDDcd001675.50E-101762No hitNo description
PROSITE profilePS5129424.96463117IPR017930Myb domain
SMARTSM007175.4E-1567115IPR001005SANT/Myb domain
PfamPF002494.7E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-2470115IPR009057Homeodomain-like
CDDcd001674.05E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEQYGWGREE GGWRKGPWTA QEDKLLLGYV RQQGDGRWNS VAKLTGLKRS GKSCRLRWVN  60
YLRPDLKRGK ITPQEETVIL ELHALWGNRW STIARSLPGR TDNEIKNYWR THFKKGKPSS  120
KNIERARARF LKQRREIMQG HHEHQRDVQD DDGAASADNN GDGAASHHAD EATTWPAPPP  180
AQDDDDLAMM RDMADMDDFL QYHDPMSTSA YFLLDGGDAA ASDAGSSGEI DACGATWGSL  240
WNLDDVVVVD DVGGGGACGW GSFALLQDHG LAFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25151157106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992831e-139AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence.
GenBankAK1118071e-139AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572719.11e-118PREDICTED: myb-related protein Zm38
TrEMBLM7ZMZ90.0M7ZMZ9_TRIUA; Transcription factor MYB48
STRINGMLOC_6786.11e-161(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.13e-65myb domain protein 79